microbial
There are 3 repositories under microbial topic.
mblmicdiv / course2017
Genomics lessons for week 4 of the Microbial Diversity course at the Marine Biological Lab in Woods Hole, MA.
Language:Standard ML 21Arkadiy-Garber / MagicLamp
A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.
Language:HTML 13genomic-medicine-sweden / jasen
Bacterial typing pipeline for clinical NGS data. Written in NextFlow, Python & Bash.
Language:Nextflow 8Wishartlab-openscience / Biotransformer
A computational tool for the prediction and identification of metabolites.
Language:Java 5- Language:JavaScript 3
- Language:Java 3
Clinical-Genomics / microSALT
Microbial Sequence Analysis and Loci-based Typing pipeline for use on NGS WGS data.
Language:Python 2- Language:C++ 2
Microbial community samples collected from the Trunk River in Woods Hole, MA 2014-2016.
Language:HTML 1IzabelShen / Abundance-occupancy
A repository for R code, data, figures, scripts from the manuscript "Abundance-occupancy relationships along taxonomic ranks reveal a consistency of niche differentiation in bacterioplankton with distinct lifestyles" (Submitted).
Language:R 0thecrobe / STURLAMicrobiome
This repo contains the code and files for the linked publication
Language:R 0yhjung1231 / Laundry-QMRAproject-2022
Quantitative microbial risk assessment modeling
Language:R 0
