mothur

There are 0 repository under mothur topic.

• SchlossLab / schtools

  Schloss Lab Tools for Reproducible Microbiome Research 💩

  microbiomemothurr-packagerstats
  Language:R 28

• achillesrasquinha / 16SMaRT

  16s rRNA Sequencing Meta-analysis Reproducibility Tool (using mothur).

  16s-rrnabioinformaticsmeta-analysismothurpythonreproducible-researchsequencing
  Language:Python 7

• campenr / mothur-py

  Python wrapper for the bioinformatics tool mothur

  bioinformaticsmothurpythonpython-wrapper
  Language:Python 6

• biocorecrg / microbiome_procedures

  Mothur procedures for 16S and ITS analysis

  microbiome-analysismicrobiome-workflow16sitsmothurphyloseqfungi
  Language:R 5

• dizak / mothulity

  Easy-to-use tool facilitating work with Mothur.

  mothurdiversitymicrobial-communitiesmicrobial-ecology16s16s-rrnaitsmicrobialfungaleasy-to-use
  Language:JavaScript 3

• SchlossLab / mothur-snakemake-workflow

  Snakemake template for microbial amplicon sequence analysis with mothur.

  16s-rrnamothursnakemake
  Language:Python 3

• k8hertweck / FieldLabComparison

  microbiome analysis of ant colonies

  mothursilvarotu-tablemicrobiome-analysis
  Language:Shell 2

• marius44 / mothur_protocols

  Repositorio de pipelines necesarios para analizar secuencias de amplicones illumina con mothur. Se incluyen análisis con asv de bacterias y de hongos (estos últimos poco explicados por Schloss en su SOP).

  illuminaamplicon-sequencingmothur
  Language:R 2

• SchlossLab / Sovacool_OptiFit_mSphere_2022

  The manuscript accompanying the OptiFit algorithm in mothur

  microbiomemothurreproducible-papersnakemake
  Language:Python 2

• csc-training / chipster-microbial

  Microbial Community Analysis with Chipster

  amplicon-sequencingbioinformaticsdata-analysisexercisesmicrobiologymothurphyloseqtraining
  1

• joycewang914 / Nursing_Home_Patient_Gut_Microbiota

  Identifying gut microbiome features associated with the risk of acquiring an enteric drug-resistant organism (e.g. vancomycin-resistant Enterococcus and resistant gram-negative bacteria) in patients recently discharged from acute-care hospital and admitted into nursing homes.

  nursingantibiotic-resistancemicrobiome-analysismothurantibiotic-stewardshipjournal-article
  Language:R 1

• bathyscapher / Metabarcoding-Pipeline-Building

  CUSO Microbiome analysis workshop 2020

  bioinformatics-analysismothurdada2rmicrobiomeecology
  Language:R 0

• aortiz24 / FieldLabComparison

  microbiome analysis of ant colonies

  mothursilvarotu-tablemicrobiome-analysis
  Language:Shell

• Shuyib / mouse_gut_OTU

  Vectorization and Unsupervised Learning of Mouse Operation Taxonomic Units to determine which species of bacteria form distinct groups in a dataset.

  16s-rrnasopsmothurpython3pandas-dataframenumpy-arraysmatplotlib-figuresscikitlearn-machine-learningt-snepca-analysisdata-visualizationgut-microbiomeunsupervised-learninganacondaanalysisdataset
  Language:Jupyter Notebook