Dandan Izabel-Shen's repositories
PAPER_IzabelShen_AlgaPOM_2021
Workflows and R scripts for Izabel-Shen et al.
Abundance-occupancy
A repository for R code, data, figures, scripts from the manuscript "Abundance-occupancy relationships along taxonomic ranks reveal a consistency of niche differentiation in bacterioplankton with distinct lifestyles" (Submitted).
DRAM
Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes
FreshSaltMicrobesCollide
Fresh-Salt Microbes Working Group
METABOLIC
A scalable high-throughput metabolic and biogeochemical functional trait profiler
metagenomics-workshop
Metagenomics Workshop
metaWRAP
MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis
minimalR-raw_data
Data to be used with minimalR
ncbi_blast_tutorial
Short introduction to command line NCBI blast tools
sickle
Windowed Adaptive Trimming for fastq files using quality
sra-tools
SRA Tools