Benjamin-Lee

deep-rules

Ten Quick Tips for Deep Learning in Biology

CodonAdaptationIndex

Python Implementation of Codon Adaption Index

vdsearch

Viroid-like circRNA discovery and analysis suite

DNAvisualization.org

🧬📈 Turn DNA sequences into interactive visualizations

squiggle

📈 DNA Sequence Visualization for Humans

viroiddb

A curated database of all available viroid-like RNA sequences

circkit

High-performance circular sequence manipulation

cookiecutter-pandoc-paper

A Cookiecutter for writing papers in Markdown via Pandoc

riboviria.org

Source code for riboviria.org

congo

A simple, lightweight theme for Hugo built with Tailwind CSS.

branchpro

This is a one-week project in which we are using branching processes to estimate the time-dependent reproduction number of a disease.

contacts-app

A little Vue-based contacts app demo

cookiecutter

A command-line utility that creates projects from cookiecutters (project templates), e.g. Python package projects, jQuery plugin projects.

dhall

A redirector for HUDS menus

dotfiles

electrum

Electrum Bitcoin Wallet

fire

🔥 Just a tiny tool for managing my money (and first learning Vue)

horcrux

Split your file into encrypted fragments so that you don't need to remember a passcode

ksw2

Global alignment and alignment extension

MMseqs2

MMseqs2: ultra fast and sensitive search and clustering suite

Nim

Nim is a statically typed compiled systems programming language. It combines successful concepts from mature languages like Python, Ada and Modula. Its design focuses on efficiency, expressiveness, and elegance (in that order of priority).

nimeasyga

A friendly genetic algorithm library for Nim

oeb278-paper

plos

A PLOS template for Quarto

quarto-oxford-thesis

A Quarto template for Oxford DPhil theses

supabase

The open source Firebase alternative. Follow to stay updated about our public Beta.

textlint-rule-one-sentence-per-line

A fixable textlint rule to add a line break after each sentence

timestamp

A simple method of generating timestamps for my Zettelkasten

ve-sequence-parsers

Convert genbank, fasta, sbol to JSON and back again!

vue-plotly-1

📈 vue wrapper for plotly.js