xin-huang

dadi-cli

Automated and Distributed Population Genetic Model Inference from Allele Frequency Spectra

sstar

Detecting Archaic Introgression from Population Genetic Data with S*

PopGenTools

A collection for available tools in population genetics

pgml

PGML Notes: Interactive Jupyter Notebooks for an Introduction to Population Genetics with Machine Learning

SeleDiff

A fast and scalable tool for estimating and testing selection differences between populations

xin-huang.github.io

My Pages

analysis2

Analysis for the second consortium paper.

ArchIE

A statistical framework for reference-free inference of archaic local ancestry

azure-test

Snakemake pipeline for Azure deployment

dadi-cli-analysis

Snakemake pipelines for replicating the dadi-cli analysis

donni

machine learning applications for dadi

FILET

Software for detecting introgression using supervised machine learning

gaia

Genomic Analysis of Introgressed Alleles with Machine Learning

glottolog

Collaborative data curation for Glottolog

sai

Statistics for Adaptive Introgression

stdpopsim

A library of standard population genetic models

stone

悲喜千般同幻渺，古今一夢盡荒唐。

gpn

Genomic Pre-trained Network

introNets

Joint_Inference_DFE_demog_humans

Lithuanian-archaic-introgression

Revisiting Adaptive Introgression at the HLA Genes in Lithuanian Genomes with Machine Learning

maladapt

prml

staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

TreeSeqPopGenInference

Exploring how to use tree sequences for multiple population genetic inference tasks.

tskit

The tree sequence toolkit

xin-huang