genome-scale-metabolic-model

There are 0 repository under genome-scale-metabolic-model topic.

franciscozorrilla / metaGEM
:gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data
metagenomics computational-biology metabolic-models gut-microbiome snakemake metagenome-assembled-genomes mags metabolism bioinformatics flux-balance-analysis genome-scale-metabolic-model metabolic-modeling microbial-ecology microbiome systems-biology
Language:Python 173
Matteopaluh / KEMET
KEGG Module Evaluation Tool
kegg kegg-modules metabolic-models metabolic-reconstruction gap-filling genome-scale-metabolic-model gem
Language:Python 23
rcolpo / pgp_reconstruction
Pathway-Guided Pruning Reconstruction of Genome-Scale Metabolic Models
bioinformatics community-simulations computational-biology fba flux-balance-analysis genome-scale-metabolic-model genome-scale-model metabolic-modeling metabolic-models metabolism microbial-communities
Language:Python 11
zimmmermann-kogadeeva-group / GEMsembler
GEMsembler tool for assembling and comparing several types of Genome-Scale Metabolic Models (GEMs)
cobra gems genome-scale genome-scale-metabolic-model metabolism modeling
Language:Python 3
draeger-lab / C_striatum_GEMs
This repository contains all changes made to the strain specific models of Corynebacterium striatum.
constraint-based-modeling flux-balance-analysis genome-scale-metabolic-model pathogen python sbml-model
Language:HTML 1
c-mayer / ECMproject
ECMproject is a standalone python program, which enumerates Elementary Conversion Modes (ECMs) of metabolic models.
bioinformatics cobrapy computational-biology genome-scale-metabolic-model lexicographic-reverse-search sbml ecmtool elementary-conversion-modes elementary-mode-analysis mplrs-mplrs-project
Language:Jupyter Notebook 0
mahjalili / ssGSEAGEM
Metabolic function-based normalization improves transcriptome data-driven reduction of genome-scale metabolic models.
genome-scale-metabolic-model gem integration gimme ssgsea
Language:R 0
nmendozam / masterThesis
Computational modeling of a human astrocyte with multi-omic data
genome-scale-metabolic-model astrocyte-model
Language:MATLAB 0
Robaina / Phycogem
Modeling phycospheric metabolic interactions in python
bioinformatics genome-scale-metabolic-model marine-microbial-ecology metagenomics phycosphere
Language:Python