guanjue

S3V2_IDEAS_ESMP

S3norm ver2 + IDEAS epigenetic state / master peak list

S3norm

An normalization method that can normalize high signals without inflate the background noise.

IDEAS_2018

Jointly characterizing epigenetic dynamics across multiple cell types

snapshot

Snapshot: a package for clustering and visualizing epigenetic history during cell differentiation

snapshot_pre

Snapshot: a model-free method for clustering and visualizing epigenomic data

VISION_mouseHem_code

The data preprocessing pipeline for the VISION project (for mouse data)

CTCF_Auxin_clustering

ctcf_degradation_analysis

imputed_cistrome_2022

Interspec-EpiState-NMF

Inter-Species Epigenetic State Correlation matrix decomposition via Non-negative Matrix Factorization

JMnorm

JMnorm: a novel Joint Multi-feature normalization method for integrative and comparative epigenomics

Joint_Human_Mouse_IDEAS_State

normalize_to_vision

S3norm_pro

PKnorm: a nonlinear model for sequencing depth and signal-to-noise ratio normalization between epigenomic data

SCM

vision_mouse_mm10

JMnorm_0

JMnorm: a novel approach for Jointly Multi-feature normalization of epigenomic data across cell types and species

bayesian-optimization-in-action

Source code for Bayesian Optimization in Action, published by Manning

book

:books: All programming languages books

ChatGPT

🔮 ChatGPT Desktop Application (Mac, Windows and Linux)

HiC_tools

A collection of tools for Hi-C data analysis

LGL_analysis

paper-reading

深度学习经典、新论文逐段精读

public_log_descriptions

scripts_for_fimo

seqpos

State_module

test.bb.files

test_data2

tmp_figs