epiviz / epiviz

EpiViz is a scientific information visualization tool for genetic and epigenetic data, used to aid in the exploration and understanding of correlations between various genome features.

Epiviz

Epiviz is a scientific information visualization tool for genetic and epigenetic data, used to aid in the exploration and understanding of correlations between various genome features.

For more information, visit - http://epiviz.github.io/

Using any PHP supported webserver

Copy the Epiviz directory to the webserver configured directory. Navigate to /epiviz/index.php on your browser.

Using PHP

PHP (http://php.net/) lets your run local webservers. Navigate to localhost:8181 on your browser. To run epiviz use:

php.exe -S localhost:8181 -t <location of the epiviz directory>

Using Docker

This repository includes a Dockerfile to run a webserver that serves the epiviz web application. It includes a site-settings.js file that sets up data backends pointing to the University of Maryland. Update that file to use a different backend. It is registered in the DockerHub registry: (https://hub.docker.com/r/epiviz/epiviz/)[https://hub.docker.com/r/epiviz/epiviz/]. To run it use:

docker pull epiviz/epiviz
docker run --name epiviz-app -d -p 80:80 epiviz/epiviz

To Compile closure

java -jar compiler.jar --js_output_file=epiviz-compiled-jar.js --js 'src/epiviz/**' --js '!src/epiviz/default-settings.js' --js '!src/epiviz/epivizr-settings.js' --js '!src/epiviz/standalone-settings.js' --entry_point=goog:epiviz.main