Patrick Roelli's repositories
dropSeqPipe
A SingleCell RNASeq pre-processing snakemake workflow
CITE-seq-Count
A tool that allows to get UMI counts from a single cell protein assay
pandoc_resume
Paul Fenwick's Resume
sib-days-single-cell
Files related to the single cell workshop given at the sib-days 2018
simulate-rnaseq-reads
Simulating RNA-Seq reads from transcriptome to test software (e.g. for Drop-Seq singleCell software)
awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
rust-htslib
This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.
Beer_ITS_analysis
BeerDeCoded first results using ITS
bio_practical
Tutorial script for practical course.
BRB-seqTools
Suite of tools for processing BRB-seq data
cellrouter
Reconstruction of complex single-cell trajectories using CellRouter
citeSeqPipe
Pipeline for CITE seq data
clasp-action
This action uses clasp to push or deploy to Google Apps Script.
cryptotaxsweden
Script for generating a tax report for cryptocurrency trading which can be sent to the Swedish tax authorities.
hoohm.github.io
Build a Jekyll blog in minutes, without touching the command line.
ideal_docker
Docker repo for the Ideal project https://github.com/federicomarini/ideal/
pcaExplorer
pcaExplorer - Interactive exploration of Principal Components of Samples and Genes in RNA-seq data
polars
Fast multi-threaded, hybrid-out-of-core query engine focussing on DataFrame front-ends
scg_lib_structs
Collections of library structure and sequence of popular single cell genomic methods
scngs-test-data
A workflow for creating small NGS test data sets, useful for continuous integration.
shinyforms
📝 Easily create questionnaire-type forms with Shiny
SIB_2020_Workshop
R tutorial for SIB days 2020 Spatial workshop
UMI-tools
Tools for handling Unique Molecular Identifiers in NGS data sets