compositional-data

There are 2 repositories under compositional-data topic.

• stefpeschel / NetCoMi

  Network construction, analysis, and comparison for microbial compositional data

  compositional-datamicrobiome-datanetwork-analysisrr-package
  Language:R 170

• meringlab / FlashWeave.jl

  Inference of microbial interaction networks from large-scale heterogeneous abundance data

  bioinformaticsco-occurencecompositional-dataecological-networkhigh-performance-computingjuliametadatametagenomicsmicrobiomeprobabilistic-graphical-models
  Language:Julia 89

• JuliaEarth / CoDa.jl

  Compositional data analysis in Julia

  compositional-datasimplexstatisticscompositional-data-analysiscodacompositions
  Language:Julia 61

• boehm-s / fun-php

  Functional programming utilities for PHP

  compositional-datafunction-compositionfunctional-programmingramdajs
  Language:PHP 30

• Vision-CAIR / 3DCoMPaT

  Official repository for the 3DCoMPaT dataset (ECCV2022 Oral)

  compositional-datacomputer-visiondatasetdeep-learning
  Language:Jupyter Notebook 17

• ofgulban / compoda

  Simplex space operations for compositional data implemented in Python.

  compositional-datacompositional-data-analysissimplexsimplicesn-simplexsimplex-spacebarycentric-coordinates
  Language:Python 13

• simhag / Compositional-Pre-Training-for-Semantic-Parsing-with-BERT

  Implementation of Semantic Parsing with BERT and compositional pre-training on GeoQuery

  semantic-parsingnatural-language-processingberttransformerrecombinationcompositional-data
  Language:Scala 11

• lch14forever / beem-static

  📦BEEM-Static: An R package for inferring microbial interactions based on Lotka-Volterra models

  microbiome-modelmicrobial-ecologycompositional-data
  Language:R 10

• mcomas / codapack

  statisticscompositional-data
  Language:Java 10

• Japal / zCompositions

  Imputation of zeros, nondetects and missing data in compositional data sets

  compositional-datamissing-datacensored-dataimputation-methodsnondetectionr-package
  Language:R 8

• mpascariu / CoDa

  Forecast mortality using Compositional Data Lee-Carter model - R Package

  demographymortality-forecastingcompositional-datalee-carter
  Language:R 8

• nphdang / DeepCoDA

  Deep learning for personalized interpretability for compositional health data

  deep-learninginterpretable-machine-learninginterpretable-deep-learningmachine-learningmedicinecompositional-dataattention-mechanismexplainable-aiexplainable-mlhealth-dataclassification
  Language:Python 8
• nexus

  tesselle / nexus

  Sourcing Archaeological Materials by Chemical Composition - :exclamation: This is a read-only mirror from https://codeberg.org/tesselle/nexus

  archaeologyarchaeological-sciencearchaeometryprovenance-studiescompositional-datar-package
  Language:R 5

• tystan / simplexity

  Hopefully taking out the complexity of using the simplex: functions to generate, manipulate and plot data on the simplex

  compositional-dataplottingrsimplex
  Language:R 4

• avisionh / analysis-structuralbreak

  Practical introduction to modelling and testing for structural breaks in time-series data.

  structural-break-testtime-seriescompositional-datastlchow-test
  2

• FrederickHuangLin / SECOM-Code-Archive

  Archive: Data, scripts, and outputs for the paper "Sparse Estimation of Correlations among Microbiomes (SECOM)". Please check our ANCOMBC R package for the most up-to-date SECOM functions.

  microbiomecorrelationcompositional-datasequencingancomancom-bc
  Language:HTML 2

• ajmolstad / SpPDCC

  R package for estimating sparse and positive definite basis covariance matrices from compositional data

  compositional-datacovariance-matrix-estimationmicrobiome-analysis
  Language:R 1

• bio2ds-ucm / bio2ds-ucm

  Biomedicine Data Science and Biostatistics - UCM bio2ds-ucm · they/them This is the Github repo of the Biomedicine Data Science and Biostatistics research group at Complutense University

  association-rulesbiostatisticsbiostatscomplutensecompositional-datadata-sciencemachine-learningmedicine-applicationsr-packagesresearchucm
  Language:R 1

• kkdey / dash

  Dirichlet adaptive shrinkage for compositional data

  shrinkage-estimatorcompositional-datacompositional-statisticsdirichlet-distributionsmoothing
  Language:R 1

• kkdey / dashr

  R package for Dirichlet adaptive shrinkage and smoothing

  adaptive-learningshrinkage-estimatorsmoothingshrinkagecompositional-data
  Language:R 1

• lm687 / CompSign

  CompSign: An R package for differential abundance of compositional mutational signatures

  compositional-datadirichlet-multinomialdirichlet-multinomial-regressionmultivariate-modelscorrelated-topic-model
  Language:R 1

• seungwoo-stat / 20th-PE-forecast

  Forecasting the four-party vote share of the 20th presidential election of Republic of Korea

  compositional-datapresidential-election
  Language:R 1

• seungwoo-stat / south-korea-election

  Presidential election data set from South Korea

  compositional-data
  Language:R 1

• andyphilips / dynsimpie

  Stata module to examine dynamic compositional dependent variables

  statacompositional-datatime-series
  Language:Stata 0

• dadosdelaplace / dadosdelaplace

  About me: mathematician, PhD Stats, Assistant Professor and scicomm

  biostatisticscompositional-datadata-sciencequartor-packagesstatisticsteaching-materials
  0

• fpavone / pacs_spline_density

  splineDensity Rpackage: Density estimation with smoothing B-spline

  rcppc-plus-plusrcppeigensplinesdensitycompositional-datacompositional-statisticssmoothing
  Language:C++ 0

• jhhughes256 / comp_app

  Web applications for use with compositional data. Post-graduate work for Dr. Dot Dimuid and Prof. Timothy Olds at University of South Australia.

  compositional-datashiny
  Language:R 0

• mspreafico / BO06-LOTox

  Longitudinal Latent Overall Toxicity (LOTox) profiles in osteosarcoma: a new taxonomy based on latent Markov models.

  longitudinal-datalatent-markov-modelstoxicitycompositional-data
  Language:R 0

• nfrerebeau / TaphoCeram

  Replication of Frerebeau, N., Ben Amara, A. and Cantin, N. (2020)

  archaeologyarchaeometrycompositional-datacompendium
  Language:TeX 0

• cran-task-views / CompositionalData

  CRAN Task View: Compositional Data Analysis

  compositional-datacranrrstatstask-views

• SamGalanakis / SimilarSummonersGraph

  Using champion mastery data from Rot games API to visualize champion connections based on correlation metrics of compositional data in a network. Unsupervised learning was also used to categorize the champions. Lastly, weighted graph distance was used to make a recommender system for new champions based on played chamoions input.

  compositional-dataleague-of-legends-apileagueoflegendsnetworkingrecommender-systemunsupervised-machine-learning
  Language:HTML