lch14forever

microbiomeViz

Visualize microbiome data with black magic ggtree

beem-static

📦BEEM-Static: An R package for inferring microbial interactions based on Lotka-Volterra models

NGS_scripts

Scripts for NGS analysis

BEEM

BEEM: Estimating Lotka-Volterra models from time-course microbiome sequencing data

shotgunmetagenomics-nf

hospital_microbiome

CV

shotgun-metagenomics-pipeline

A pipeline for primary analysis of shotgun metagenomic sequencing data

bioinforUtils

bpipe-pathoscope2

CellBender

CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.

covid19_google_mobility

docker_files

dotfiles

elementalist

This repository provides extra theme elements as an extension of ggplot2.

ggessentials

ggsc

ggstar

:star: star layer for ggplot2

hospital_microbiome_explorer

humann

HUMAnN 3.0 is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).

kraken2

The second version of the Kraken taxonomic sequence classification system

lch14forever

lch14forever.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

lchblogs

MaotaiWangWangBot

毛台汪汪机器人是一个忠实的帮助你去完成守护的机器人。

ncov2019-artic-nf

A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019

nexflow_pipelines

nextflow

A DSL for data-driven computational pipelines

qiime2_16S_processing

StrainFinder

StrainFinder