eccdna

There are 1 repository under eccdna topic.

• iprada / Circle-Map

  A method for circular DNA detection based on probabilistic mapping of ultrashort reads

  eccdnaecdnagenotypingngsstructural-variationcircular-dnacircrnacircrna-predictioncircrnasmicrodna
  Language:Python 60

• nf-core / circdna

  Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from cancer and other eukaryotic cells.

  nf-corenextflowworkflowpipelinecirculardnaecdnagenomicscircle-seqampliconarchitectampliconsuiteeccdnaextrachromosomal-circular-dna
  Language:Python 25
• ECCsplorer

  crimBubble / ECCsplorer

  The ECCsplorer is a bioinformatics pipeline for the automated detection of extrachromosomal circular DNA (eccDNA) from paired-end read data of amplified circular DNA.

  eccdnacircular-dna
  Language:Python 18

• pierrj / ecc_caller

  ecc_caller is a pipeline designed to take Illumina NovaSeq paired end sequencing reads generated from isolated circular DNA and call eccDNA forming regions.

  eccdnacircular-dnaecdna
  Language:Python 6

• leishenggit / CircleBase

  An integrated resource and analysis platform for human eccDNAs

  eccdnafunction-regulationpagerank
  Language:HTML 2

• ParallelLight / eccdna

  The Repository for TeCD！

  eccdna
  Language:HTML