Sean Bresnahan's repositories
Galbraith-2016-PNAS-ASE-replication
Replicating the bioinformatics and statistics pipelines for allele-specific expression analysis of ovary tissue from sterile and reproductive reciprocally crossed honey bees as described in Galbraith et al. (2016). PNAS. https://www.pnas.org/content/113/4/1020
allele-specific-transcription-and-m6A
Examining the role of transcription and post-transcriptional modifications on mediating intragenomic conflict in honey bees
AST-tutorial
This tutorial demonstrates best practices for processing whole genome sequence (WGS) and mRNA sequencing (mRNA-seq) reads for allele-specific transcriptomics analysis.
Dissertation-Appendix-D
Supplementary information for Chapter 5 of "Molecular Mechanisms of Phenotypic Variation in Honey Bees" - a dissertation in Molecular, Cellular, and Integrative Biosciences by Sean T. Bresnahan
IGC-retinue
Beyond conflict: intragenomic conflict predicts individual variation in altruistic behaviour.
localBlastTutorial
A quick tutorial for local BLAST using a custom sequence database
metacleaner
Software for automated curation of barcode sequence databases for metabarcoding and metagenomics
sbresnahan.github.io
My website
TexasCancerGenomics
Analysis of paired tumor-normal whole exome sequencing data generated in a pilot open-access study of participants in Texas.
Winter-Honeybee-Transcriptome
Analysis of summer nurse & forager and winter honey bee fat body and flight muscle transcriptomes