allele-specific

There are 0 repository under allele-specific topic.

• FelixKrueger / SNPsplit

  Allele-specific alignment sorting

  allele-specificbioinformaticsngssequencing
  Language:Perl 50

• p4rkerw / Wilson_Muto_NComm_2022

  Containerized workflow for analysis of human diabetic kidney disease by snRNA-seq and snATAC-seq

  allele-specificckddiabetesheritabilitykidneysingle-cell-atac-seqsingle-cell-rna-seqsingle-cell-sequencing
  Language:R 12

• churchill-lab / emase-zero

  C++ Implementation of EMASE

  allele-specificexpressionexpectation-maximization-algorithmallele-specific-expression
  Language:C++ 6

• gimelbrantlab / ASE

  early version of (Pipeline for detection of differential allelic imbalance from RNA-seq)

  allele-specificallele-specific-expressionrna-seq
  Language:HTML 6

• mskcc / facets2n

  Algorithm to implement Fraction and Allelic Copy number Estimate from Tumor/normal Sequencing using unmatched normal sample(s) for log ratio calculations

  copy-number-variationngsngs-analysisallele-specific
  Language:R 6

• p4rkerw / SALSA

  Single Cell Allele-Specific Analysis - Containerized tool for genotyping, phasing, mapping bias correction, and generation of single cell allele-specific counts

  allele-specificbioinformaticsgenotypesingle-cellsingle-cell-atac-seqsingle-cell-rna-seq
  Language:Shell 5

• vertesy / X-Reactivation

  Analysis scripts for the Vertesy 2018 paper: "Parental haplotype specific single-cell transcriptomics reveal incomplete epigenetic reprogramming in human female germ cells"

  scrna-seqepigeneticsallele-specificdevelopmental-biologyhuman-developmenttranscriptomicsimprinting
  Language:R 2

• UDC-GAC / PARamrfinder

  PARamrfinder is a high performance parallel tool to predict allele-specific DNA methylation (ASM) in mammals in the absence of SNP data.

  allele-specificbioinformaticsbioinformatics-toolbisulfite-sequencingdna-methylationhigh-performancehigh-performance-computingmethylationmpiopenmp
  Language:C++ 1

• lancelothk / ASM-Detector

  Tools to analyse allele-specific methylation using bisulfite sequencing data

  bisulfite-sequencingdna-methylationallele-specific
  Language:Java 0

• adeschen / GeneiASE_Tools

  R scripts to process input/output related to GeneiASE software

  allele-specificexpressgeneiaserrna-seqrna-seq-analysis
  Language:R

• dvera / harp

  Haplotype-Assisted Read Parsing

  alignmentallele-specificfastqgenomics
  Language:R

• sbresnahan / IGC-CD-SM

  Supplementary Materials for "Intragenomic conflict underlies extreme phenotypic plasticity in queen-worker caste determination in honey bees (Apis mellifera)"

  allele-specificchip-seq-analysissupplemental-materialstranscriptomicsgenomic-imprinting
  Language:HTML