Constantin Pape's repositories
cluster_tools
Distributed segmentation for bio-image-analysis
dalle-mini-poster
Create posters from dalle-mini / craiyon screenshots
deep-micro-val
Evaluating segmentation methods for common cell segmentation problems
ome-zarr-py
Experimental implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
03_learned_representations
An execise for using features extracted from a vision transformer for downstream tasks
bioimage-io-resources
Model repo for bioimage.io
computational-cell-analytics-home
A truly simple website template for academics
micro-sam
Segment Anything for Microscopy
micro_sam-feedstock
A conda-smithy repository for micro_sam.
mobie_utils-feedstock
A conda-smithy repository for mobie_utils.
napari
napari: a Qt- and VisPy-based ndarray visualization tool
napari-skimage-regionprops
Feature extraction for labeled objects in images using regionprops from scikit-image
pybdv-feedstock
A conda-smithy repository for pybdv.
python-elf-feedstock
A conda-smithy repository for python-elf.
SuperHuman
Superhuman accuracy on the SNEMI3D connectomics challenge
synaptic-reconstruction
Reconstruction of synaptic structures in electron microscopy
torch_em-feedstock
A conda-smithy repository for torch_em.