constantinpape

z5

Lightweight C++ and Python interface for datasets in zarr and N5 format

torch-em

Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.

elf

Utils and convenience functions for large-scale bio-image analysis.

cluster_tools

Distributed segmentation for bio-image-analysis

pybdv

python tools for BigDataViewer

affogato

Affinity based segmentation algorithms and tools

training-deep-learning-models-for-vison

dl-teaching-resources

Collection of teaching material for deep learning for (biomedical) image analysis

dalle-mini-poster

Create posters from dalle-mini / craiyon screenshots

3d-cnn

deep-micro-val

Evaluating segmentation methods for common cell segmentation problems

nifty

nifty cPP and Python

ome-zarr-py

Experimental implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

pytorch-3dunet

3D U-Net model for volumetric semantic segmentation written in pytorch

affogato-feedstock

A conda-smithy repository for affogato.

bioimage-io-resources

Model repo for bioimage.io

cluster_tools-feedstock

A conda-smithy repository for cluster_tools.

computational-cell-analytics-home

A truly simple website template for academics

LIVECell

mobie_utils-feedstock

A conda-smithy repository for mobie_utils.

napari-skimage-regionprops

Feature extraction for labeled objects in images using regionprops from scikit-image

ngff

Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

nifty-feedstock

A conda-smithy repository for nifty.

pyotritonclient

A Pyodide python http client library and utilities for communicating with Triton Inference Server (based on tritonclient from NVIDIA)

RAMA

stable-diffusion

staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

stardist

StarDist - Object Detection with Star-convex Shapes

z5py-feedstock

A conda-smithy repository for z5py.

ZeroCostDL4Mic

ZeroCostDL4Mic: A Google Colab based no-cost toolbox to explore Deep-Learning in Microscopy