constantinpape

boots

out of the box segmentation

gpu_benchmarks

minitorch

Lightweight torch wrapper for bio-medical segmentation

mutex-watershed

The mutex watershed for image segmentation

scikit-image

Image processing in Python

affinities

Implementation of different affinity computations

bigcat

Collaborative volume annotation and segmentation with BigDataViewer

bigcat-spark-downsampler

spark downsampler designed for use with bigcat

block_experiments

boost-cpp-feedstock

A conda-smithy repository for boost-cpp.

boost-feedstock

A conda-smithy repository for boost.

butler

Templates and implementations of TCP-Server based services for distributed tasks

CNNectome

Scripts for building, training and validating CNNs for Connectomics

cremi_python

Python scripts to read and write the CREMI hdf5 file format.

custom_malis

Malis C++ implementation with accessible custom neighborhoods

gunpowder

Data loading DAG for Greentea.

gunpowder-experiments

hdf-n5-converter

converter for turning labeled hdf5 data into n5 label dataset

imagepy-feedstock

A conda-smithy repository for imagepy.

inferno

A utility library around PyTorch

inferno-experiments

interactive_solver_backend

json

JSON for Modern C++

n5

Not HDF5

ray-prototype

simple-viewer

simple standalone BigDataViewer for multiple N5 (or HDF5) datasets

skan

Python module to analyse skeleton (thin object) images

waterz

Simple watershed and agglomeration library for affinity graphs.

xt_util

Functions for nd data processing with xtensor

xtveyor

Minimal example fior xtensor build with appveyor.