constantinpape

z5

Lightweight C++ and Python interface for datasets in zarr and N5 format

torch-em

Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.

elf

Utils and convenience functions for large-scale bio-image analysis.

cluster_tools

Distributed segmentation for bio-image-analysis

pybdv

python tools for BigDataViewer

dalle-mini-poster

Create posters from dalle-mini / craiyon screenshots

3d-cnn

deep-micro-val

Evaluating segmentation methods for common cell segmentation problems

nifty

nifty cPP and Python

ome-zarr-py

Experimental implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

03_learned_representations

An execise for using features extracted from a vision transformer for downstream tasks

bioimage-io-resources

Model repo for bioimage.io

computational-cell-analytics-home

A truly simple website template for academics

docs

Documentation for napari (other than API docs)

LIVECell

liveCell-1

micro-sam

Segment Anything for Microscopy

micro_sam-feedstock

A conda-smithy repository for micro_sam.

mobie-python-examples

mobie_utils-feedstock

A conda-smithy repository for mobie_utils.

napari

napari: a Qt- and VisPy-based ndarray visualization tool

napari-skimage-regionprops

Feature extraction for labeled objects in images using regionprops from scikit-image

ngff

Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

pybdv-feedstock

A conda-smithy repository for pybdv.

python-elf-feedstock

A conda-smithy repository for python-elf.

stable-diffusion

stardist

StarDist - Object Detection with Star-convex Shapes

SuperHuman

Superhuman accuracy on the SNEMI3D connectomics challenge

torch_em-feedstock

A conda-smithy repository for torch_em.

ZeroCostDL4Mic

ZeroCostDL4Mic: A Google Colab based no-cost toolbox to explore Deep-Learning in Microscopy