constantinpape / synaptic-reconstruction

Reconstruction of synaptic structures in electron microscopy

Synaptic Reconstruction

Reconstruction of synaptic structures in electron microscopy.

THIS IS WORK IN PROGRESS!

Installation

• Make sure conda or mamba is installed.
  • If you don't have a conda installation yet we recommend micromamba
• Create the environment with all required dependencies: mamba env create -f environment.yaml
• Activate the environment: mamba activate synaptic-reconstruction
• Install the package: pip install -e .

Tools

Segmentation Correction

https://napari.org/stable/howtos/layers/labels.html

Distance Measurements