ilastik

ilastik

ilastik-shell, applets, and workflows to string them together.

marching_cubes

Standalone marching cubes implementation and Python bindings

volumina

Volume Slicing and Editing

ilastik4ij

ImageJ plugins to run ilastik workflows

ilastik-napari

ilastik plugin for napari

multiHypothesesTracking

ilastik-feature-selection

Select filter features with mutual-information-based methods

tiktorch

Tiktorch

ilastik-conda-recipes

Conda recipes for building ilastik dependencies.

webilastik

A revision of classic ilastik to drop legacy stuff and make it portable

wsdt

watershed on distance transform

ilastik.github.io

bioimage-io-resources

resources for the BioImage.IO Model Zoo

hytra

Python module for multi HYpotheses TRAcking

cloud_ilastik

APIs for running ilastik inside HPB infra

dpct

Dynamic Programming Cell Tracking Solver

fastfilters

fast gaussian and derivative convolutional filters

hytra-fork

Python module for multi HYpotheses TRAcking

ndstructs

Utility classes to deal with 5d arrays

conda-3rdparty

extract license info for conda environments

fastfilters2

SIMD-accelerated 2D and 3D image features

ilastikrag

ND Region Adjacency Graph with edge feature algorithms

ilastikrag-fork

ND Region Adjacency Graph with edge feature algorithms

ilastiktools

tools for carving

ilastiktools-fork

tools for carving

netzip

ZIP file reader optimized for network access

netzip.js

ZIP file reader optimized for network access

neuroglancer

WebGL-based viewer for volumetric data

org.ilastik.bdvsource

publish-conda-stack

Scripts to update our published conda packages when our recipes have changed.