constantinpape

cremi_tools

skeletor

Tools and wrappers for skeletonization.

image-processing

minitorch

Lightweight torch wrapper for bio-medical segmentation

pyaffine

Affine transformations in python (prototype)

pyopengm

Modern python wrapper for opengm

scikit-image

Image processing in Python

skanner

Tools for skeleton analysis with skan

z5py-benchmarks

ASV benchmark suite for z5 / z5py

boost-cpp-feedstock

A conda-smithy repository for boost-cpp.

cnn-segmentation-benchmark

fastpy

Turorial on speeding up python for image processing

glasbey

Generate maximally distinct sets of colors

graph

Graphs and Graph Algorithms in C++, including Minimum Cost (Lifted) Multicuts

h3x

Automagic code refactor

imagepy-feedstock

A conda-smithy repository for imagepy.

kimimaro

TEASAR derived skeletonization of 3D densely labeled images.

mc_luigi

Multicut workflow for processing large-scale connectomics data, using luigi for pipelining.

mulastik

Ilastik mutex watershed prototype

n5

Not HDF5

NeuroMetrics

Bundling different metrics for evaluation of Neurosegmentation

paintera-conversion-helper

Script to assist conversion of n5 datasets to paintera-friendly formats

pybigcat

Bigcat format converter from python

python-core-stub

simpleference

Simple large scale inference for 3d conv-nets

vis_tools

Visualization helper for graph-based segmentation

volumina_viewer

wxpython-feedstock

A conda-smithy repository for wxpython.

xtensor

Multi-dimensional arrays with broadcasting and lazy computing

xvision