Constantin Pape's starred repositories
segment-anything
The repository provides code for running inference with the SegmentAnything Model (SAM), links for downloading the trained model checkpoints, and example notebooks that show how to use the model.
tuning_playbook
A playbook for systematically maximizing the performance of deep learning models.
FriendsDontLetFriends
Friends don't let friends make certain types of data visualization - What are they and why are they bad.
machine-learning-articles
🧠💬 Articles I wrote about machine learning, archived from MachineCurve.com.
PyContrast
PyTorch implementation of Contrastive Learning methods
TotalSegmentator
Tool for robust segmentation of >100 important anatomical structures in CT and MR images
pyocclient
ownCloud client library for Python
scikit-fmm
scikit-fmm is a Python extension module which implements the fast marching method.
conda-libmamba-solver
The libmamba based solver for conda.
image-processing
Image Processing with Python
Awesome-Zarr
🎀 Awesome Zarr resources
eulerangles
simplify the handling of large sets of Euler angles in Python
traccuracy
Utilities for computing common accuracy metrics on cell tracking challenge solutions with ground truth
go-nuclear
Guides and code for 3D nuclear instance segmentation
empanada-napari
Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari
BigStitcher-Spark
Running compute-intense parts of BigStitcher distributed
dl-for-micro
Course and exercises on deep learning for microscopy image analysis