Constantin Pape's repositories
dl-teaching-resources
Collection of teaching material for deep learning for (biomedical) image analysis
mAP_3Dvolume
Super-Fast mAP evaluation for large 3D volumes, Visual Computing Group at Harvard University
paintera_tools
Tools for generating, curating and merging paintera datasets
pytorch-3dunet
3D U-Net model for volumetric semantic segmentation written in pytorch
affogato-feedstock
A conda-smithy repository for affogato.
cluster_tools-feedstock
A conda-smithy repository for cluster_tools.
constantinpape.github.io
Another blog - why not?
CSBDeep
Image restoration for fluorescence microscopy
napari-ome-zarr
A reader for zarr backed OME-NGFF images
nifty-feedstock
A conda-smithy repository for nifty.
plant-seg
A tool for cell instance aware segmentation in densely packed 3D volumetric images
pyotritonclient
A Pyodide python http client library and utilities for communicating with Triton Inference Server (based on tritonclient from NVIDIA)
staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
vigra-feedstock
A conda-smithy repository for vigra.
z5py-feedstock
A conda-smithy repository for z5py.
ZeroCostDL4Mic
ZeroCostDL4Mic: A Google Colab based no-cost toolbox to explore Deep-Learning in Microscopy