jguhlin

minimap2-rs

Rust bindings to minimap2 library

sfasta

sfasta

beaker

explode_orfs

useful-nextflow-patterns

Useful nextflow patterns and examples

AnnoSINE

SINE annotation tool for plant genomes

bptree

Basic B+ Tree for use in SFASTA (and possibly elsewhere)

ffforf

fffx

Yet another fasta/x/q file parser

needletail

Fast FASTX parsing and k-mer methods in Rust

AGM-workshop-2023

Reproducibility with Nextflow and nf-core, structured for the one-day AGM training day workshop

alen

Simple terminal alignment viewer

bevybio_sequence_widget

bonito

A PyTorch Basecaller for Oxford Nanopore Reads

EDTA

Extensive de-novo TE Annotator

fffx-tools

Simple utils for cleaning up FASTX files

gbwt-rs

GBWT in Rust

herro

HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of >= 10 kbps is recommended).

KGD

Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment

ld54-limited-space

Ludum Dare 54 - Limited Space

ldjam55

medaka

Sequence correction provided by ONT Research

my-test-repo

nocroissants

OxidMAF

Rust-driven MAF Tools

pangenome-prep

ReadStats

typst-invoice

A Typst template for generating invoices

xorf

Xor filters - efficient probabilistic hashsets. Faster and smaller than bloom and cuckoo filters.

yazi

💥 Blazing fast terminal file manager written in Rust, based on async I/O.