single-nucleotide-polymorphisms

There are 0 repository under single-nucleotide-polymorphisms topic.

• CBIIT / nci-webtools-dceg-linkage

  LDlink is a suite of web-based applications designed to easily and efficiently interrogate linkage disequilibrium in population groups. Each included application is specialized for querying and displaying unique aspects of linkage disequilibrium.

  linkage-disequilibriumgenome-wide-association-studieshaplotype-blockspopulation-geneticssingle-nucleotide-polymorphismsld-analysisld-statisticsld-visualization
  Language:Python 21

• rdattafl / SNP-Data-Analysis-Project

  A GitHub compiling the input data, Python and Jupyter Notebook scripts, and all relevant statistical outputs from running the AutoMLPipe-BC automated machine learning pipeline (from the Urbanowicz Lab - https://github.com/UrbsLab) on a large-scale single nucleotide polymorphism (SNP) dataset from patients with congenital heart disease (CHD)

  single-nucleotide-polymorphismscongenital-heart-diseasedata-wranglingpython-3automl-pipelinemachine-learning
  Language:Jupyter Notebook 2

• cejdan / sarc-predictions

  Code repository for my master's thesis project

  single-nucleotide-polymorphismssupervised-machine-learningnicholas-cejda
  Language:R 1

• NicholasDominic / The-NucleoNets

  A novel deep polygenic neural network for predicting and identifying yield-associated SNPs in Indonesian rice accessions.

  bioinformaticsdeep-learningartificial-intelligencemolecular-biologysingle-nucleotide-polymorphismsgenomicsgeneticsneural-networkdata-sciencemachine-learningelastic-netentropy
  Language:Python 1

• darlenewagner / SNP_Wrap_Python

  Facilitates post-processing of SNP pipeline outputs

  concordancesingle-nucleotide-polymorphismssnps
  Language:Python 0
• Simulate_a_SNP_Pair

  hrmazumder / Simulate_a_SNP_Pair

  Simulation of a pair of Single Nucleotide Polymorphisms (SNPs) and associated binary response (e.g., disease status) based on real SNP data in R.

  single-nucleotide-polymorphismssimulationbioinformaticssnp-data
  Language:R 0

• MH-Lee / gwas_data_preprocessing

  SNP(VCF format) data preprocessing for GWAS disease prediction

  bioinformaticssingle-nucleotide-polymorphismssnp
  Language:Shell 0

• miquelescobar / single-nucleotide-polymorphisms

  Application of kernel methods to classify SNP's.

  kernel-methodssingle-nucleotide-polymorphisms
  Language:Jupyter Notebook 0

• NicholasDominic / Stochastic-VIF-ID-Rice-SNPs

  By leveraging ensemble learning, this program can be used to analyze the Linkage Disequilibrium between SNPs in each Indonesian rice chromosomes. Developed using Python 3.9.12.

  bootstrapingensemble-learninggenomicslinkage-disequilibriummachine-learning-algorithmsmulticollinearitypython-3single-nucleotide-polymorphismsstochastic-processesvariance-inflation-factor
  Language:Jupyter Notebook 0

• tkmanabat / SARS-CoV-2-Clade-Identifier

  SARS-CoV-2 Clade identifier with SNP data using machine learning.

  genomicsbioninformaticssars-cov-2cladesingle-nucleotide-polymorphismsphylogenetics
  Language:Jupyter Notebook 0
• genetic-ancestry

  ahmedmoustafa / genetic-ancestry

  Genetic Ancestry

  ancestrydiversityethnicity-analysisgenomicsggplotpcaplinkpopulation-geneticssingle-nucleotide-polymorphismspopulation-structureprincipal-component-analysis
  Language:Jupyter Notebook

• connor122721 / SharedPolymorphismsDaphnia

  Evolutionary genomics of shared mutations within the Daphnia pulex species complex.

  evolutiongenetic-diversitysingle-nucleotide-polymorphismsdaphniabalancing-selection
  Language:R