Darlene Darlington Wagner's repositories
nextflowViral
Pipelines written in Nextflow and Python to facilitate comparative genomics analysis for viruses. Requires Python 3.9.1 or above and Nextflow 21.04.3 and above.
Darlenes_Data_Mining
Scripts which perform web scraping, spreadsheet parsing, or both
DataViz_For_Fastq
A showcase of functions using Biopython, including FastqGeneralIterator, along with pandas and matplotlib for teaching Big Data parsing for NGS
NGS_Multi_Heal
NGS_Multi_Heal simplifies quality analysis, trimming, and healing of paired-end reads
NGS_Plot_Widgets
Provides graphical and .json output for paired-end Next-Generation Sequencing (NGS) data as well as genome coverage data from .bed files. Requires Python 3.9.1 or higher.
NGS_QC_Piper
Automates Illumina paired-end fastq NGS sequencing quality assurance.
SNP_Wrap_Python
Facilitates post-processing of SNP pipeline outputs
Parse_Blast_Python
python scripts for reading blastn output and manipulating text files for blast databases
RDase_Curator
A retrieval, annotation, curation tool for cofactor-dependent core metabolic proteins
text_Munge_pl
Command-line perl scripts to automate routine, boring text editing tasks, such as formatting author's lists for EndNote