greengenes

There are 0 repository under greengenes topic.

pirovc / multitax
Python package to obtain, parse and explore biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)
taxonomy ncbi gtdb silva greengenes open-tree-taxonomy ott python tree pyhton-library biological-taxonomies taxonomies bioinformatics
Language:Python 35
PhyloMAF
mmtechslv / PhyloMAF
Next Generation Phylogenetic Microbiome Analysis Framework
microbiome phylogenetics taxonomy otu-table bioinformatics 16s-rrna taxonomic-classification taxonomy-assignment greengenes silva ott phylogenetic-trees microbiome-analysis
Language:Python 1
mmtechslv / taxamatcher
Correlates target taxonomy(i.e consensus lineages) with a reference taxonomy such as Greengenes, SILVA, etc.
taxonomy taxon taxa lineage taxonomy-assignment greengenes silva taxonomic-classification bioinformatics metagenomics
Language:Python 0
glickmac / OTU_Groupings
biom greengenes merging microbiome otus qiime silva workflow
Language:Shell