Alex's Lemonade Stand Foundation

refinebio

Refine.bio harmonizes petabytes of publicly available biological data into ready-to-use datasets for cancer researchers and AI/ML scientists.

training-modules

A collection of modules that are combined into 1-5 day workshops on computational topics for the childhood cancer research community.

scpca-nf

scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data

scpca-portal

Single-cell Pediatric Cancer Atlas Portal is a growing database of uniformly processed single-cell data from pediatric cancer tumors and model systems

2024-august-training

Website for Data Lab "Introduction to RNA-Seq and Reproducible Research" Training, August 2024 at UMN

fancySVD

Only the IterativeSVD algorithm from iskandr/fancyimpute to make dependency resolution easier.

OpenScPCA-analysis

An open, collaborative project to analyze data from the Single-cell Pediatric Cancer Atlas (ScPCA) Portal

refinebio-docs

User Documentation for refine.bio

refinebio-py

A python client for the refine.bio API.

refinebio-web

Refinebio Web

reproducible-research

Repository for Reproducible Research Practices Training Workshop

resources-portal

rrp-workshop-exercises

Materials for reproducible research practices workshop exercises.

scpcaTools

alsf-scpca

Management and analysis tools for ALSF Single-cell Pediatric Cancer Atlas data.

medulloblastoma-classifier

refinebio-js

Javascript client for refine.bio

ScPCA-manuscript

The manuscript repository for the Single-cell Pediatric Cancer Atlas (ScPCA)

.github

2024-june-training

Website for Data Lab "Introduction to Single Cell RNA-Seq" Training, June 2024

ccdatalab-gifs

Hosting gifs for ccdatalab.org

OpenScPCA-manuscript

OpenScPCA-nf

A workflow for running OpenScPCA analysis modules

sc-data-integration

scpca-docs

User information about ScPCA processing

scpca-downstream-analyses

This repository is intended to store our pipeline for marker genes analysis.

scpca-paper-figures

Figures for https://github.com/AlexsLemonade/ScPCA-manuscript/

scrumlord

Continuous administration of the Greene Lab's electronic scrum

spellcheck

This repository contains a Docker image with the R spelling package

training-specific-template

Template repository that can be cloned to create repo for administering a specific training workshop