Alex's Lemonade Stand Foundation's repositories
training-modules
A collection of modules that are combined into 1-5 day workshops on computational topics for the childhood cancer research community.
scpca-portal
Single-cell Pediatric Cancer Atlas Portal is a growing database of uniformly processed single-cell data from pediatric cancer tumors and model systems
2023-chop-training
A workshop on version control, project management, and analytical code review
OpenScPCA-analysis
An open, collaborative project to analyze data from the Single-cell Pediatric Cancer Atlas (ScPCA) Portal
refinebio-docs
User Documentation for refine.bio
refinebio-py
A python client for the refine.bio API.
refinebio-web
Refinebio Web
reproducible-research
Repository for Reproducible Research Practices Training Workshop
rrp-workshop-exercises
Materials for reproducible research practices workshop exercises.
alsf-scpca
Management and analysis tools for ALSF Single-cell Pediatric Cancer Atlas data.
refinebio-js
Javascript client for refine.bio
ScPCA-manuscript
The manuscript repository for the Single-cell Pediatric Cancer Atlas (ScPCA)
2024-june-training
Website for Data Lab "Introduction to Single Cell RNA-Seq" Training, June 2024
ccdatalab-gifs
Hosting gifs for ccdatalab.org
git-code-review-live-demo
Template repository for live demos associated with the Childhood Cancer Data Lab workshop on advanced git topics and analytical code review.
OpenScPCA-nf
A workflow for running OpenScPCA analysis modules
scpca-docs
User information about ScPCA processing
scpca-downstream-analyses
This repository is intended to store our pipeline for marker genes analysis.
scpca-paper-figures
Figures for https://github.com/AlexsLemonade/ScPCA-manuscript/
spellcheck
This repository contains a Docker image with the R spelling package
training-specific-template
Template repository that can be cloned to create repo for administering a specific training workshop