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metagenopolis's repositories

meteor

Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-level taxonomic profiling (Bacteria, Archaea and Eukaryotes), functional analysis and strain-level population structure inference.

Language:PythonGPL-3.024 4 59

CroCoDeEL

CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data

Language:PythonGPL-3.023 2 2

ESKRIM

ESKRIM is a reference-free tool that compares microbial richness in shotgun metagenomic samples by counting k-mers

Language:PythonGPL-3.05 10

OneNet

OneNet is a stability based network inference aggregation method from whole metagenome sequencing data, which aims at fostering reproducibility and precision

Language:RMIT100