count-matrix

There are 0 repository under count-matrix topic.

epigen / spilterlize_integrate
A Snakemake workflow to split, filter, normalize, integrate and select highly variable features of count matrices resulting from experiments with sequencing readout (e.g., RNA-seq, ATAC-seq, ChIP-seq, Methyl-seq, miRNA-seq,...) including diagnostic visualizations.
atac-seq batch-effect bioinformatics biomedical-data-science chip-seq count-matrix dimensionality-reduction integration ngs normalization pipeline rna-seq snakemake visualization workflow
Language:Python 9
showteeth / DEbPeak
DEbPeak - Analyze and integrate multi-omics to unravel the regulation of gene expression.
analysis atac-seq chip-seq count-matrix differential-expression geo integration m6a-seq peak-related rna-seq transcription-factors visualization
Language:HTML 8
FarhanaRiaz123 / Pangenome-Analysis
Pangenome-Analysis.py is written for extraction of core, accessory and unique genomes (Gene families and proteins) along with filtration of single copy orthologues, creation of binary and count matrices as well as removal of duplicates.
pangenome pangenome-inference coregenome singletons orthomcl downstream-analysis accessory-genes binary-matrix count-matrix bioinformatics-analysis bioinformatics biology plasmodium duplicates-removal proteome-clustering gene-families gene-family annotation pangenome-pipeline clustering
Language:Python 2

epigen / spilterlize_integrate