Joyce Wang's repositories
Genomic_and_Patient_Transfer_Analyasis_of_Resistant_Bacteria
Active surveillance of newly-admitted nursing home patients for colonization of antibiotic-resistant bacteria reveals that multiple lineages have spread across southeast Michigan healthcare networks.
Microbial_Antibiotic_Network_in_Nursing_Homes
Interaction networks between antibiotic exposure, microbial factors and clinical features in nursing home patients influence the risk of catheter-associated urinary tract infection.
Nursing_Home_Patient_Gut_Microbiota
Identifying gut microbiome features associated with the risk of acquiring an enteric drug-resistant organism (e.g. vancomycin-resistant Enterococcus and resistant gram-negative bacteria) in patients recently discharged from acute-care hospital and admitted into nursing homes.
codeclub
This is a code club repository.
compositionality_test
Code to test if your differential abundance results based on relative abundances of microbes are affected by compositionality
evaluate-gene-level-metagenomics-tools
Reproducible Evaluation of Gene-Level Metagenomics Tools
mikRopML
User-friendly ML pipeline for microbiome data
mmvec
Neural networks for microbe-metabolite interaction analysis
Recovery_Determinants_Study
Data and scripts of Antibiotic Recovery Study