Yuchen's repositories
sRNA_Viewer
Tools for visualizing plant sRNA-seq alignments, emphasizing RNA sizes
pRNASeqTools
plant NGS analysis
TRMRNAseqTools
The TRMRNASeqTools is a SHELL and Python based pipeline designed for automatic general analysis for TRM sRNA sequencing data in supported plants.
Bioinformatics-skills
生物信息学技能提升，专注于工具使用与编程
ChatGPT-Next-Web
One-Click to deploy well-designed ChatGPT web UI on Vercel. 一键拥有你自己的 ChatGPT 网页服务。
Deep_learning_paper_tutorial
Share some classic papers and detailed notes in deep learning
renlab_tailing_trimming_20240111
This pipeline is python script for analysis plant miRNA taling and trimming.
ShortStack
ShortStack: Comprehensive annotation and quantification of small RNA genes
strucVis
Colorful display of small RNA depth of coverage on a predicted RNA secondary structure
bioinfo-notebook
🔬 Bioinformatics Notebook. Scripts for bioinformatics pipelines, with quick start guides for programs and video demonstrations.
bokeh
Interactive Data Visualization in the browser, from Python
clipper
A tool to identify CLIP-seq peaks
GeneGPT
Code and data for GeneGPT.
ncrna-deep
Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"
numpy-ml
Machine learning, in numpy
openai-proxy
OpenAI proxy on Cloudflare Worker / Vercel Edge
Pan_Ath
Code for Article "A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species range"
PBOX-manuscript
Code for reproducing the PBOX manuscript results
RNA-FM
RNA foundation model
sklearn-doc-zh
:book: [译] scikit-learn（sklearn） 中文文档
smalldisco
Discovery of siRNA regions and small RNA tail quantification
sradownloader
A script to make downloading of SRA/GEO data easier
waka-box
📊 Update a pinned gist to contain your weekly WakaTime stats