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Kur1sutaru / ruichenlabcodes

Single cell ATAC and RNA seq data analysis

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atac-seqbioinformatics-pipelinemerfishsingle-cell-analysis

Some tips to run cellqc pipeline

  • Create simbolic links to the files ln -s

  • unzip all the .tar.gz files, and create a folder to all of them analysis.tar.gz filtered_feature_bc_matrix.tar.gz raw_feature_bc_matrix.tar.gz

  • Optional configuration for dropkick [to be tested] dropkick: skip: false method: multiotsu numthreads: 2 #INSTEAD 1

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Single cell ATAC and RNA seq data analysis

atac-seqbioinformatics-pipelinemerfishsingle-cell-analysis

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