Sanjay Curtis Nagi's repositories
rna-seq-pop
Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
AnoExpress
Anopheles gene expression in insecticide resistance studies
PhD_thesis_code
Jupyter notebooks for thesis analyses not contained in other repositories/workflows
sanjinho-site
Personal website and blog, based on amanhimself.dev 🙏
ancIBD
Detecting IBD within low coverage ancient DNA data. Development Repository for software package that contains code for manuscript.
anopheles-genomic-surveillance.github.io
Lecture notes for a course on genomic surveillance of malaria vectors, developed by PAMCA and MalariaGEN
autoresearcher
⚡ Automating scientific workflows with AI ⚡
compkaryo
A python package for determining inversion genotype in Anopheles coluzzii and gambiae
malariagen-data-python
A Python package providing functions for accessing and analysing MalariaGEN data.
sanjaynagi.github.io
Personal website and blog
personal-site
My personal website - built with React, React-Router, React-Snap for Static-Export, and GitHub Pages.
phasedibd
Identity-by-descent inference using the templated positional Burrows-Wheeler transform (TPBWT)
scikit-allel
A Python package for exploring and analysing genetic variation data
sgkit
Statistical genetics toolkit
snakemake-gui
Snakemake-GUI is a graphical user interface (GUI) that can be used to run Snakemake workflows. It is essentially sequanix, without the sequana pipelines.
snakemake-wrappers
This is the development home of the Snakemake wrapper repository, see