Davis McCarthy's repositories
archive-scater
An archived version of the scater repository, see https://github.com/davismcc/scater for the active version.
workshop-scRNAseq-oxford-sep2016
scRNA-seq workshop in Oxford on 9 September 2016
fibroblast-clonality
Website for the fibroblast clonality project conducted at EMBL-EBI and the Wellcome Sanger Institute ca 2017-2019.
r-singlecell-img
Docker definition of an image containing the latest version of R and many packages for single-cell analysis
scater_tutorials_open_data
A set of tutorials using the scater package to QC publicly available single-cell expression data sets
r-singlecell-plus-img
R and more packages for single-cell data analysis
scater-paper-2016
Everything required to produce the 2016 scater manuscript.
scRNA.seq.course
Analysis of single cell RNA-seq data course, Cambridge University, UK
SingleCellOmics_Heidelberg_Apr2017
Material for the single-cell methylation analysis session at EMBL's Single-Cell 'Omics course in Heidelberg, April 2017.
BiocStickers
Stickers for some Bioconductor packages - feel free to contribute and/or modify.
cowley-dotemacs
Set up files and directories for emacs
cruk-autumn-school-2017
CRUK Bioinformatics Workshop September 2017
embl_predocs_data_analysis_in_R_Nov2015
Materials for a short session on "Data Analysis in R" for EMBL predocs covering linear models and principal components analysis.
embl_predocs_limix_tutorial_Nov2015
IPython notebooks, data and other required materials for the EMBL Predocs' Course on eQTL mapping in Heidelberg, November 2015.
r-tidybioc-img
Build a docker image with latest R and packages from tidyverse, Bioconductor and friends.
scaterPaperExtras
Discussion board for modifications to the scater paper