subclone-identification

There are 0 repository under subclone-identification topic.

AntonioDeFalco / SCEVAN
R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the malignant cells. It also infers the copy number profile of malignant cells, identifies subclonal structures and analyses the specific and shared alterations of each subpopulation.
single-cell copy-number-variation copynumber subclonal-deconvolution subclone-identification clonal-evolution clonal-analysis microenvironment tumor-heterogeneity tumor-classification tumor-evolution scrna-seq-analysis scrna-pipeline scrna-seq aneuploidy
Language:HTML 82
caravagnalab / mobster
Model-based subclonal deconvolution from bulk sequencing.
beta-distribution mixture-model model-based-clustering pareto-distributions subclone-identification
Language:HTML 30
keyuan / ccube
Bayesian mixture models for estimating and clustering cancer cell fractions
intratumor-heterogeneity variational-inference subclone-identification cancer-evolution
Language:R 24
zengliX / SIFA
SIFA: identify tumor subclones and infer phylogenetic tree from WGS data
bayesian-inference subclone-identification tumor-evolution tumor-heterogeneity
Language:R 3
CRUST
Subhayan18 / CRUST
R package for clonal deconvolution
deconvolution subclone-identification clonality vaf-distribution subclone phylogenetics
Language:R 0

AntonioDeFalco / SCEVAN