cytomining

DeepProfiler

Morphological profiling using deep learning

pycytominer

Python package for processing image-based profiling data

cytominer

Methods for Image-Based Cell Profiling

cytominer-database

A package for storing morphological profiling data.

profiling-handbook

Image-based Profiling Handbook

profiling-recipe

Image-based Profiling Recipe

cytominer-eval

Common Evaluation Metrics for DataFrames

DeepProfiler-handbook

Documentation for installing and using of DeepProfiler

cytoplot

Package for visualizing high-dimensional single-cell data

CytoTable

Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.

matric

Calculate quality metrics for readouts from high-throughput profiling experiments

copairs

Find pairs and compute metrics between them.

cytominer-vm

Packer scripts to create VMs for running image-based profiling workflows on a cluster

.github

A special GitHub repository for setting the Cytomining organization profile and default community health files.

cytominer-python

DEPRECATED A Python package for mining patterns in perturbations

cytominer-transport

cytominergallery

A Gallery of Cytominer Vignettes

cytostats

Statistical Functions for Single-Cell Analysis

evalzoo

Evaluate metrics using cytominer-eval and matric

pipeline-examples

Example pipelines for training purposes

pycytominer-Docker

profiling-template

Image-based Profiling Template

cytomining.github.io

Cytomining organization GitHub Pages configuration.

CytoTable-benchmarks

Benchmarks for CytoTable and related.

cytotools

Command-line Tools to Get Things Done Using Cytominer

matric-vm

Packer scripts for creating a matric VM