Yohsuke T. Fukai's repositories
microscopy_shadow_correction_stitching
Snakemake workflow for shadow correction and stitching of Zeiss CZI files
MicroTailor
A tweakable microscopy image stitching library for n-dimensional data
napari-laptrack
Tracking particles in Napari, using the LapTrack library
napari-travali
Cell track editor based on napari
automated_LSM
Automation of Zeiss LSM microscopy via macro
1cpn-model
1CPN Coarse-grained model of chromatin
arboretum
Track and lineage visualization with btrack, LapTrack and Napari
image_analysis_cookbook
Some random python pieces to explain image analysis
microscopy_image_segmentation
Image segmentation / summarization workflow for zarr images.
multiview-stitcher
A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.
my_academic_data
Storing, compiling and deploying personal academic data
napari-amdtrk-plugin
Napari plugin to manually amend live-cell imaging tracks
napari-gelanalyzer
Electrophoresis gel analyzer with napari
napari-segmentation-human-in-loop
Another implementation of human-in-loop segmentation training in napari.
nfcore-modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
traccuracy
Utilities for computing common accuracy metrics on cell tracking challenge solutions with ground truth
yfukai.github.io
Personal website for Y. T. Fukai