Daniel Lundin's repositories
biomakefiles
Library makefiles for various bioinformatic tools.
pfitmap-db
Database construction tools for pfitmap-shiny
pfitmap-nextflow
Nextflow pipeline for hierarchical protein classification
3diphy
Maximum likelihood structural phylogenetics by including Foldseek 3Di characters. Supporting Information for Puente-Lelievre et al. 2023n for
ampliseq
16S rRNA amplicon sequencing analysis workflow using QIIME2
bioconda-recipes
Conda recipes for the bioconda channel.
dltemplates
Templates for various programming languages and tasks.
EUKulele
Automatic eukaryotic taxonomic classification
foldseek
Foldseek enables fast and sensitive comparisons of large structure sets.
funcscan
(Meta-)genome screening for functional and natural product gene sequences
gff2tsv
R script that converts gff files to tsv, splitting the attribute field into separate fields.
nf-co.re
Code and files for the main nf-core website.
nf-core-ampliseq-symlink-bug
Repo for testing of potential symlink problem in Ampliseq
nf-core-mag
Assembly and binning of metagenomes
nf-core-modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
r4ds_seminars
R for data science seminar code and data
sativa
Semi-Automatic Taxonomy Improvement and Validation Algorithm
test-datasets
Test data to be used for automated testing with the nf-core pipelines