Quadram Institute Bioscience

socru

Order and orientation of complete bacterial genomes

dadaist2

Dadaist2 🟨 Highway to R

albatradis

Comparative TraDIS analysis

tatajuba

Identification and classification of homopolymeric tracts from reads.

galaxy-tools

A collection of bioinformatics tools for use with galaxy written at Quadram Institute

uvaia

Reference-based alignment and sequence database search of SARS-CoV-2 genomes.

datasciencegroup

Scripts and docs from the datascienceatqib group

namingGTDB

QuaTradis

A pipeline to analyse transposon directed insertion-site sequencing

dorado-gpu-testing

Benchmarking several NVIDIA GPUs with dorado

irida-plugin-qi-taxon

irida-plugin-qi-typing

NBI-Slurm

Experimental interface to slurm

nf-ont-taxamap

Taxonomic profiling ONT metagenomics reads using minimap2

phylo-methods

biofu

Scripts

galaxy-front-page

galaxy-front-page

gmh-meta-its-profiling

Whole Metagenome Shotgun and ITS amplicon sequencing methods

gmh-metafun

Functional analysis of metagenome datasets

irida-uploader

Sequence file uploader for IRIDA

mbp

A modern, high customizable, responsive Jekyll theme for documentation with built-in search.

minimal-mistakes

:triangular_ruler: Jekyll theme for building a personal site, blog, project documentation, or portfolio.

ont-candida

Candida parapsilosis assemblies with ONT long reads

phylosequel

Where Data Becomes Phyloseq Magic!

python-workshop

quadram-institute-bioscience.github.io

Core Bioinformatics public page

sample_sheet_validator

Python script validates the contents of a Nextseq 2k sample sheet, ensuring that it meets the expected format

st_illumina_sample_sheet_validator

Sample sheet validator for demultiplexing Illumina runs

uflow

USEARCH based workflow

workshops-2024

Core Bioinformatics Workshops at the Quadram Institute Bioscience