Seb Rauschert's repositories
OceanOmics-amplicon
A pipeline to analyse marine fish amplicon data
BandageNG
a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
cookiecutter
A cross-platform command-line utility that creates projects from cookiecutters (project templates), e.g. Python package projects, C projects.
dadasnake
Amplicon sequencing workflow heavily using DADA2 and implemented in snakemake
dot-files
dot-files selectively copied from Harry R. Schwartz (hrs/dotfiles), Howard Abrams (howardabrams/dot-files) etc..
DT-Editor
This is a DT Editor Shiny app
LLM-RAG
This repo demonstrates the development of Retrieval Augmented Generation (RAG).
nCoV_tracker
Covid 2019 interactive mapping tool
nextflow-fastp-shiny
a shiny frontend for the nextflow-fastp pipeline
pagoda2
R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets
pb-human-wgs-workflow-snakemake
Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads
ranacapa
R package for downstream analysis for anacapa eDNA pipeline
reproducibility-template-R
A template for reproducible R analysis projects