exact-matching

There are 0 repository under exact-matching topic.

CMU-SAFARI / GenStore
GenStore is the first in-storage processing system designed for genome sequence analysis that greatly reduces both data movement and computational overheads of genome sequence analysis by exploiting low-cost and accurate in-storage filters. Described in the ASPLOS 2022 paper by Mansouri Ghiasi et al. at https://people.inf.ethz.ch/omutlu/pub/GenStore_asplos22-arxiv.pdf
read-mapping in-storage-processing pre-alignment-filtering exact-matching long-reads ftl hardware-accelerator sequence-alignment ssd near-data-processing
Language:C 12
bodeolukolu / Qmatey
Quantitative metagenomic alignment and taxonomic exact-matching
bioinformatics metagenomics 16s-seq its-sequence microbiome exact-matching shotgun-metagenomics reduced-representation-sequencing strain-level-profiling compositional-correlation
Language:Shell 6
zeyadusf / Exact-matching-algorithms-DNA
Bioinformatics algorithms for DNA pattern searching
approximate-string-matching bioinformatics dna-sequences exact-matching pyqt6
Language:Python

CMU-SAFARI / GenStore