bhklab / XevaDB

XevaDB is a database for PDX pharmacogenomic data.

XevaDB: A Database For PDX Pharmacogenomic Data.

Setup Instructions

• Clone the repo

git clone [e-mail]:bhklab/XevaDB.git
cd XevaDB

• In the project directory, install all server dependencies npm i
• Create .env using .env.example as a reference to access the database
• Start the server by running npm start or npm run devstart(development mode) or nodemon start(to see the live updates) command
• Start the client (development mode) by running npm start
• Open http://localhost:3000 to view it in the browser.

Dependencies

• ReactJS
• React-Router
• NodeJS/ExpressJS
• KnexJS
• Body-parser

Dev Dependenices

• Nodemon
• Eslint

Build Instructions

cd client && npm build

Builds the app for production to the build folder. It correctly bundles React in production mode and optimizes the build for the best performance.

Servers

• Production Server: http://xevadb.ca
• Testing Server: http://beta.xevadb.ca

Migrations

• If knex is globally available use knex with the specific command else use ./node_modules/.bin/knex.
• knex migrate:make (migration_name) - To create a new migration file.
• knex migrate:latest - To run the latest migrations and create corresponding tables.

Seeds (Seeding Files)

• Create manually a file (touch file_name).
• Run knex seed:run to run the seeding file(s) in order to seed the table(s) in the database.