bhklab / med-imagetools

Transparent and reproducible medical image processing pipelines in Python.

bhklab/med-imagetools Issues

Please clarify the license that covers this code
Updated 16 days ago5
Create internal list of dataset directory
Updated a year ago1
DICOM-Segmentation Module IO
Updated a year ago1
Crawl portion of autopipeline misses CT and RTSTRUCT files
Updated a year ago
make to-dos from description
Updated a year ago
RTSTRUCT QC Check
Updated a year ago
QC checks to output FAILURE
Updated a year ago
Processing RTPLAN modality
Updated a year ago1
Error when forming edge table
Updated a year ago1
Does autopipeline take care of the position of the input dicoms
Updated a year ago3
How can I ignore files/subjects with error?
Closed a year ago3
Finish documentation
Closed 2 years ago
autopipeline failure to save RTStruct due to name containing invalid character "<"
Closed 2 years ago2
Error with custom pipeline inside main script module (`joblib.externals.loky.process_executor.BrokenProcessPool`)
Closed 2 years ago4
read_dicom_auto notes
Closed 2 years ago1
Making duplicated subject folder
Closed 2 years ago
Using a custom dataset for the autopipeline
Closed 2 years ago4
New edge type (RTDOSE-RTPLAN)
Closed 2 years ago
autopipeline failure on CRLM dataset due to series with too few slices during Image Smoothing/resampling
Closed 2 years ago1
Change output folder structure + segmentation to be:
Closed 2 years ago
Pipeline Template Updates
Updated 2 years ago1
Data Graph title HTML not showing up properly
Updated 2 years ago
tests/test_autopipe.py error on macOS / Ubuntu
Closed 3 years ago1
file.open when file is a string
Closed 3 years ago
ValueError on head-neck-pet-ct AutoPipeline demo
Closed 3 years ago
ValueError: Type names and field names must be valid identifiers: 'Subject ID'
Closed 3 years ago
Exporting multiple ROIs using regex in StructureSetToSegmentation
Updated 4 years ago1
Re-write pipeline execution model
Updated 4 years ago
Create examples of usage for internal datasets
Updated 4 years ago