BHKLAB

genefu

R package providing various functions relevant for gene expression analysis with emphasis on breast cancer.

uhn-radcure-challenge

Official repository of the 2020 UHN RADCURE challenge.

Xeva

XEnograft Visualization & Analysis

PredictIO

ToxicoGx

A statistical package, in R, used in cancer research to analyze toxicity of drugs on cancer gene expression across large-scale toxicogenomic datasets.

PredictIO-webapp

An web application that allows users to explore gene signatures in immunotherapy studies of ICB-treated patients, and to obtain gene signature predictions using molecular data of their own studies of ICB-treated patients.

eacon_cnv_pipeline

CrosstalkNet

A web resource to analyze bi-partite and non-bipartite biological networks.

NPM1-AML

PGxVision

PGxVision is short for PharmacoGenomic VISualisation and InterpretatiON. This R package is a Shiny dashboard that lets users visualize RNA-based cancer biomarkers for drug response and prognosis.

snakemake-kubernetes-api

Flask API to be used as the new data processing layer of ORCESTRA.

rPharmacoDI

R code which enchances the PharmacoDI Python package.

XevaDI

The XevaDI is a python package that transforms the CSV files from the Xeva set to create the database table for XevaDB.

CCL_webapp

CCLid

ChrisEelesScripts

cinet

circRNA-detection

Clinical-Trial-SE

DeepCINET

EaCoN

Easy Copy Number !

icb_data_exploration_and_analysis

A repository for sample code used to explore and analyze ICB data objects. Code is in both R and Python

leukemia-heterogeneity-analysis

Heterogeneity in leukemia cells that escape drug-induced senescence-like state

MetaBias

A repository to study the impact of violating the independence assumption in meta-analysis on biomarker discovery

MVA_DNF

Computational pharmacogenomics screen identifies synergistic statin-compound combinations as anti-breast cancer therapies

nnUnet_segmentation_model_benchmark

node-react-boilerplate

orcestra2cbio

Script to download ICB data from ORCESTRA and creates files to upload to cBioPortal

testPkg

zero_interaction_potency-reproduction

Repository reproducing the original ZIP paper: Yadav, B., et al . (2015). Searching for Drug Synergy in Complex Dose–Response Landscapes Using an Interaction Potency Model. DOI: https://doi.org/10.1016/j.csbj.2015.09.001