bhklab / XevaDB

XevaDB is a database for PDX pharmacogenomic data.

https://www.xevadb.ca/

bhklab/XevaDB Issues

Add heading to individual dataset page
Closed 2 years ago1
Box plot is not aligned properly in Safari browser
Closed a year ago
Update `dataset` summary page to consume the `dataset stats` API end point
Closed 2 years ago
Create a new `API` end point to get the different data type count for each dataset
Closed 2 years ago
Create migration and seeding file for the biomarker table
Closed 2 years ago
Update: Remove `SearchResultOncoprint` component and merge it with `OncoprintData` component to handle the search related to HeatMap.
Closed 2 years ago1
Update: Remove `SearchResultHeatMap` component and merge it with `HeatMapData` component to handle the search related to HeatMap.
Closed 2 years ago1
Update: Dataset API end points to fetch detailed information regarding all the datasets or a single dataset to include the `drug` information.
Closed 2 years ago1
Update: DataStructure of the data required to create the heatmap!
Closed 2 years ago1
Update: `Tissue` individual page to make the chart cleaner
Closed 2 years ago1
Fix: Dose curve for the growth curve
Updated 2 years ago
Update: Drug Individual page to include data for response other than `mRECIST`
Closed 2 years ago
Fix: Search failing when selecting CNV and Gene Expression data for the genomics
Closed 2 years ago1
Fix: Heatmap doesn't show `legend` when selecting a few drugs
Closed 2 years ago1
Update: color of `PubChem CID` to represent it as a clickable value
Closed 2 years ago
Fix: Missing `labels` for the Bars in `Bar chart` for `Drug` and `Patient` summary page
Closed 2 years ago
Add: An icon in front of gene in `Oncoprint` to redirect to the biomarker page and choose the gene as the default
Closed 2 years ago
Add: `PieChart` for Drug Individual Page
Closed 2 years ago
Update: `Tree diagram` on Individual Patient Page to increase the spacing
Closed 2 years ago1
Fix: `Scatter plot` for Individual Drug Page to include all the model response data
Closed 2 years ago1
Calculate mRECIST, Slope, AUC for average curve(s)
Updated 2 years ago
Update model response API to provide data for all the models for a particular patient; true in case of UHN data
Closed 2 years ago1
Using the correct mRECIST for the UHN dataset in the heatmap
Closed 2 years ago
Add an overlay to the forest plot on the Main Biomarker page by default
Closed 2 years ago
Update Selection for Biomarker page to include drugs and genes
Closed 2 years ago1
Update Biomarker Page to have a selection for Genomics on the side of Gene selection
Closed 2 years ago1
Update the BarChart on Drug Individual Page to a Scatter Plot
Closed 2 years ago1
Remove models from tissue individual page graph
Closed 2 years ago1
Biomarker page navigation through heatmap
Closed 2 years ago
Biomarker page
Closed 2 years ago
Limit the search to `50` genes in the search and not allowing users to search for more than that
Closed 2 years ago1
Update the font family for the website
Closed 2 years ago1
Legends according to the data availability for the oncoprint
Closed 2 years ago1
add KulGap, TGI and ABC stat
Updated 2 years ago
Individual patient page
Closed 2 years ago1
Update: plot on the patient summary page
Closed 3 years ago1
Add: new `drug` individual page
Closed 2 years ago
Update: `datasets` summary page
Closed 3 years ago1
Update: `survival (days)` header in the curve page to remove data after the decimal point
Closed 3 years ago1
Add: tooltip to the table header in the curve page
Closed 2 years ago1
Add: `model`, `drug` and `type` to the tooltip of the point in the growth curve
Closed 2 years ago1
Update: `batch information` from the tooltip in the growth curve
Closed 2 years ago
Add: Average curve tooltip
Updated 2 years ago
Make a box in growth curve and align legends in the box; also move the export graph button in the box.
Updated 2 years ago
Reduce white space (margin bottom) from the oncoprint
Closed 2 years ago1
Dataset Individual Page
Closed 2 years ago1
Update: merge `Chemotherapeutic agents` and `Chemotherapy` for drug table
Updated 3 years ago
Cap the max volume
Updated 3 years ago
Update the font type on heatmap and oncoprint labels
Closed 2 years ago
change the H2O to control in UHN data
Updated 3 years ago