BHKLAB

PGx_Guidelines

survcomp

R package for performance assessment and comparison for survival analysis

PharmacoDI

The PharmacoDI Python package contains all the functions needed to make the PharmacoDB database tables from a collection of .csv for each PSet.

AnnotationExamples

Gene_Expression_Bimodality

PDATK

Snakemake

wCI-libraries

Shared C code libraries for computing the wCI

COBE-Issues

KuLGaP

KuLGap is a web application that allows users to calculate KuLGaP as well as several other measurements of response to anti-tumour therapy.

QANPCRT

Quality Assurance of Nasopharyngeal Cancer Radiation Therapy Targets (CTV's) using a novel web-based quality assurance application

ToxicoDB-web

ToxicoDB is a database of curated toxicogenomics datasets that provides convenient data summary and visualization to mine these complex data. Users can find drug and gene annotations, visualize differential gene expression and enriched pathways within datasets for drug of interest.

azure-aks-snakemake

Managed Azure Kubernetes Service (AKS) cluster for deploying Snakemake jobs with dynamic resource allocation and scaling.

azure-aks-snakemake-merida

Scripts to configure and run the MERIDA_snakemake_pipeline on Azure Kubernetes Service

BreastPDTX

demo-GitHubProjectManagement

A demo and some documentation for using GitHub as our project management tool.

Dockerfiles-chris

DTP_HER2_BC

Fluvastatin_terbinafine

GSVA

Gene set variation analysis

k8s-environment-orcestra

L1k_metasig

MERIDA

C++ implementation of our MERIDA algorithm for drug sensitivity prediction.

MERIDA_snakemake_pipeline

Pipeline implementing the MERIDA logical modelling method using Snakemake to dispatch hyperparmeter tuning on a Slurm based HPC cluster.

MM2S

Multivariate-alignment

PDO_BME_EKGel

PharmacoDI_snakemake_pipeline

A Snakemake pipeline to automate the scripts for creating all PharmacoDB database tables and allow easy deployment on a range of platforms.

Radiomics-web

wci_manuscript