LTLA / csaw

Clone of the Bioconductor repository for the csaw package.

https://bioconductor.org/packages/devel/bioc/html/csaw.html

LTLA/csaw Issues

Unit test failure on Mac arm64
Closed 6 months ago6
CSI indexes
Updated 7 months ago4
Collecting windowCounts-objects in a list
Closed a year ago1
raw pvalue distribution
Updated 2 years ago1
filterWindowsLocal assay colnames
Closed 2 years ago1
filterWindowsGlobal() function running is extremely long
Updated 3 years ago1
how to use the scaled factor to normalize the bigwig files of IP when compared with negative control?
Updated 3 years ago7
Error in .extractSE(bam.file, where = where, param = param): failed to open BAM index at ...
Closed 4 years ago2
mergeResults returns two FDR values in $best
Updated 4 years ago4
Fix documentation about empiricalFDR's representative log-FC
Closed 4 years ago
going defunct before removal?
Closed 5 years ago1
Downstream analysis of Csaw differential binding region
Closed 5 years ago4
plotMD in Csaw
Closed 5 years ago2
annotation error
Closed 5 years ago2
correlateReads/extractSE error: position vector should be 1-based
Closed 5 years ago2
"xxx.bam" indexes as "xxx.bai" or "xxx.bam.bai"
Updated 5 years ago2
Refactor to use GenomicAlignments
Updated 5 years ago
Fix discard for paired end reads
Updated 5 years ago
Error when trying to run normOffsets
Closed 5 years ago2