ArtifactDB

alabaster.base

Base methods for the alabaster client framework

dolomite-base

Save Bioconductor objects in Python.

alabaster.sce

Save and load SingleCellExperiments to file

alabaster.se

Save and load SummarizedExperiment objects to file

gobbler

Gobbling up files on a shared filesystem

gypsum-worker

Bare-bones ArtifactDB API with Cloudflare

uzuki2

R lists to HDF5... or JSON, I suppose

alabaster.matrix

Save matrices, arrays and similar objects to file

alabaster.ranges

Save and load genomic ranges to file

alabaster.spatial

Save and load SpatialExperiment objects to file

alabaster.string

Save and load XStringSets from file

dolomite-mae

dolomite-sce

Save and load SingleCellExperiments from file.

alabaster.bumpy

Save and load BumpyMatrix objects from file

alabaster.files

Saving common bioinformatics formats

alabaster.mae

Save and load MultiAssayExperiments from file

alabaster.vcf

Save and load VariantAnnotation::VCF objects from file

bioconductor-metadata-index

SQLite index for Bioconductor-related metadata in gypsum

dolomite-ranges

Save and load genomic ranges in Python

dolomite-se

Save and load SummarizedExperiments in Python

gobbler-py

Python client for the gobbler

gobbler-R

R client for the gobbler service

gypsum-backup

Backup scripts for the gypsum data store

gypsum-metadata-index

Create metadata indices from gypsum-compliant storage based on SQLite

gypsum-py

Python client to gpysum

gypsum-R

R client for the gypsum REST API

SewerRat

Indexing user-defined directories on a shared filesystem

SewerRat-py

Python client for the SewerRat API

SewerRat-R

R client for the SewerRat REST API

takane

Validators for ArtifactDB file formats.