EDePasquale / DoubletDecon

A tool for removing doublets from single-cell RNA-seq data

EDePasquale/DoubletDecon Issues

Warning messages about data length differs from size of matrix
Updated 5 months ago
Some samples have an error running Main_Doublet_Decon
Updated 6 months ago2
Issues testing rho-prime values in shiny app
Updated 10 months ago1
Error in Main_Doublet_Decon
Updated a year ago
Failed to install 'shinyDirectoryInput' from GitHub:
Updated 2 years ago
Error in Improved_Seurat_Pre_Process
Updated 2 years ago
Tips for running in windows?
Updated 2 years ago
Problem with removeCC
Updated 2 years ago2
Improved_Seurat_Pre_Process: Error in asMethod(object)
Closed 2 years ago
Error in data.frame(..., check.names = FALSE) at Combining similar clusters
Updated 2 years ago1
Opening DoubletDecon Shiny app
Updated 2 years ago1
no locations are finite
Closed 2 years ago2
Unable to open DoubletDecon UI in R on Windows machine
Closed 2 years ago1
Minor issue with latest update for Seurat 4
Closed 2 years ago1
Problem with `filter()` input `..1`
Updated 2 years ago3
Any updates to support Seurat 4?
Closed 2 years ago4
Improved_Seurat_Pre_Processing()
Closed 2 years ago2
How to interpret DoubletDecon output?
Updated 2 years ago
the results of Demuxlet dataset
Updated 3 years ago2
Exporting Seurat object to the DoubletDecon app
Updated 3 years ago1
Creating synthetic doublets error
Closed 3 years ago5
untar issue during installation
Updated 3 years ago2
scATAC-seq doublet detection
Updated 3 years ago1
Trouble understanding the output
Updated 3 years ago1
A packages dependecies should NOT go into the readme!
Closed 3 years ago2
DoubletDecon - Main_Doublet_Decon - no locations are finite error.
Updated 3 years ago4
Error in paste0(location, filename, "_groups") : cannot coerce type 'closure' to vector of type 'character'
Updated 3 years ago6
Error in (function (side, at = NULL, labels = TRUE, tick = TRUE, line = NA, : no locations are finite
Updated 3 years ago1
Improved_Seurat_Pre_Process could not find function
Updated 3 years ago1
"Unable to perform mcl function for blacklist clustering" while using GUI
Updated 3 years ago1
Request: DoubletDecon Shiny - change to platform-neutral shinyFiles directory selector
Updated 3 years ago1
Post-DoubletDecon Steps
Closed 3 years ago1
Too many doublets being called
Updated 3 years ago3
Error at "combining similar clusters"
Closed 3 years ago3
Functions in NAMESPACE not exported
Closed 3 years ago2
dplyr loading issues
Closed 3 years ago1
all connections are in use error
Updated 3 years ago2
Improved_Seurat_Pre_Process: undefined columns selected
Updated 3 years ago2
Improved_Seurat_Pre_Process String Idents
Closed 3 years ago
Eagerly waiting for the protocol or guided tutorial...
Closed 3 years ago2
Running DoubletDecon on integrated seurat objects
Closed 3 years ago2
How to run DoubletDecon UI with Shiny ?
Closed 3 years ago2
sctransform pipeline?
Closed 3 years ago3
"Unable to perform mcl function for blacklist clustering, please try a different rhop." from black lists
Updated 3 years ago11
Main Function Crashes: attempt to set 'colnames' on an object with less than two dimensions
Closed 4 years ago1
problem with example data
Closed 4 years ago1
Cannot download package
Updated 4 years ago1
Seurat_Pre_Process few issues
Updated 4 years ago1
BUG in Seurat_Pre_Process
Closed 4 years ago
Error at "creating synthetic doublet profiles"
Updated 4 years ago2