Warning messages about data length differs from size of matrix
coralzhang opened this issue · comments
I tried demo code using the pbmc_small object, using the following code
` newFiles=Improved_Seurat_Pre_Process(seuratObject=pbmc_small, num_genes=50, write_files=FALSE)
write.table(newFiles$newExpressionFile, paste0(filename,"exp"), sep="\t")
write.table(newFiles$newGroupsFile, paste0(filename,"grp"), sep="\t", col.names = F)
filename="PBMC_example"
location=output_dir
results=Main_Doublet_Decon(rawDataFile=paste0(filename,"exp"),
groupsFile=paste0(filename,"grp"),
filename=filename,
location=location,
fullDataFile=NULL,
removeCC=FALSE,
species="hsa",
rhop=0.7,
write=TRUE,
PMF=TRUE,
useFull=FALSE,
heatmap=FALSE,
centroids=TRUE,
num_doubs=10,
only50=FALSE,
min_uniq=4,
nCores=-1)
`
Then I got the following warning message, not sure if it means anything wrong?
Loading packages...
Reading data...
Processing raw data...
Combining similar clusters...
Creating synthetic doublet profiles...
Step 1: Removing possible doublets...
Step 2: Re-clustering possible doublets...
Step 3: Rescuing cells with unique gene expression...
Finished!
Warning messages:
1: In matrix(value, n, p) :
data length differs from size of matrix: [270 != 1 x 90]
2: In list(...) :
closing unused connection 7